We take a broader approach


We are a contract research organization specializing in microbiome and metabolome analysis. We tackle your research question with an interdisciplinary approach, widening the spectrum of biological data we utilize and ensuring we find the right path forward. For information about our bioinformatics tools, visit our data analysis pages.



Shotgun sequencing and amplicon sequencing are two widely used metagenomics approaches in microbiome research which allow detection and quantification of specific microbes in samples. Shotgun sequencing and long-read sequencing facilitate de-novo discovery of novel microbial species and viruses.

Read more


Metabolomics is the large-scale study of small molecules known as metabolites, which aims to capture the multiple metabolic processes occurring in a biological system. Metabolite profiling provides a real-time snapshot of these metabolic processes when the sample was collected. 

Read more

At Clinical Microbiomics, we recognize the pivotal role proteomics plays in elucidating the functional dynamics of the microbiome. Proteins are the workhorses that drive biological processes, and their analysis provides invaluable insights into the intricate mechanisms underlying host-microbiome interactions.


Our proteomics services employ affinity-based assays, enabling us to quantify thousands of proteins with exceptional accuracy and sensitivity. The platform allows us to profile a wide array of biomolecules, including cytokines, chemokines, growth factors, and other signaling proteins.


By integrating proteomics data with our metagenomics and metabolomics analyses, we offer an extensive multi-omics approach, providing you with in-depth understanding of the microbiome’s functional landscape.


Our proteomics services extends across various therapeutic areas, with disease related proteins, including:


– Inflammation: Identify key protein mediators (e.g. cytokines) involved in inflammatory processes, paving the way for targeted interventions.

– Oncology: Uncover proteome signatures associated with cancer development, progression, and response to therapy.

– Neurology: Explore the intricate protein networks that govern neurological processes and their potential dysregulation in neurological disorders.

– Metabolism: Elucidate the intricate interplay between the microbiome and host metabolism, unveiling novel therapeutic targets for metabolic diseases.

– Cardiovascular: Delineate the proteome alterations that contribute to cardiovascular pathologies, enabling the development of innovative diagnostic and therapeutic strategies.

Contact us today to discuss how our proteomics services can complement your microbiome studies, unlocking a deeper understanding of the functional microbiome and its impact on human health.
Regulatory expertise

We provide submission-ready microbiome data packages through our GxP compliant services to be part of your trial master file for regulatory submissions.

Read more

Data analysis

At the core of Clinical Microbiomics are our domain specific bioinformatics expertise, toolbox and services, that provide our clients with actionable insights from complex data. We have a decade-long record developing world-leading analytical tools and concepts that allow us to answer our clients’ questions. 

See our data analysis tools

Get in touch

Tell us about your study.

Please enable JavaScript in your browser to complete this form.